$1500 for a good port job seems fair as it's a hell of a lot of hours to do it properly. What other mods have you got? I would be going with something other than Injen as 2.5" pipe is too small for the 2zz intake as I've been testing for the last 3-4 weeks.
2.5" is ok till the top end of the low cam then it starts to struggle for air flow. Lift kicks in and it level pegs the TRD intake but by the time you hit 7000rpm the power just drops off dramatically. The pipe diameter just cannot flow enough air to the engine.
Before you get the head done I'd be looking at headers, exhaust, intake then get the head ported and match the manifolds(exhaust and intake) to get the best result. From what I've read the intake side of the head is pretty good but the exhaust ports is where the gain is to be made. I wouldn't worry about spending the extra dollars on a high flow cat as the gains are so minimal that you can't justify the money. The cat on the stivo is actually very good and will flow more than enough for what most of us are planning to do with the car.
By the way testing is currently being done on some new performance accessories for the Stivo in Brisbane. Keep a watch out over the next few weeks for details.